Aaron M. Ucko [Thu, 24 Mar 2005 18:45:56 +0000 (18:45 +0000)]
To prepare to load ncbi (6.1.20041020) into
ncbi-tools6/branches/upstream/current, perform 2 renames.
* ncbi-tools6/branches/upstream/current/algo/blast/api/seqsrc_multiseq.c:
Renamed from
ncbi-tools6/branches/upstream/current/algo/blast/api/multiseq_src.c.
* ncbi-tools6/branches/upstream/current/algo/blast/api/seqsrc_multiseq.h:
Renamed from
ncbi-tools6/branches/upstream/current/algo/blast/api/multiseq_src.h.
Aaron M. Ucko [Thu, 24 Mar 2005 18:31:57 +0000 (18:31 +0000)]
To prepare to load ncbi (6.1.20040616) into
ncbi-tools6/branches/upstream/current, perform 9 renames.
* ncbi-tools6/branches/upstream/current/doc/blast/blast.html: Renamed
from ncbi-tools6/branches/upstream/current/doc/blast.txt.
* ncbi-tools6/branches/upstream/current/doc/blast/blastclust.html:
Renamed from
ncbi-tools6/branches/upstream/current/doc/blastclust.txt.
* ncbi-tools6/branches/upstream/current/doc/blast/fastacmd.html:
Renamed from ncbi-tools6/branches/upstream/current/doc/fastacmd.txt.
* ncbi-tools6/branches/upstream/current/doc/blast/formatdb.html:
Renamed from ncbi-tools6/branches/upstream/current/doc/formatdb.txt.
* ncbi-tools6/branches/upstream/current/doc/blast/impala.html: Renamed
from ncbi-tools6/branches/upstream/current/doc/impala.txt.
* ncbi-tools6/branches/upstream/current/doc/blast/megablast.html:
Renamed from ncbi-tools6/branches/upstream/current/doc/megablast.txt.
* ncbi-tools6/branches/upstream/current/doc/blast/netblast.html:
Renamed from ncbi-tools6/branches/upstream/current/doc/netblast.txt.
* ncbi-tools6/branches/upstream/current/doc/blast/rpsblast.html:
Renamed from ncbi-tools6/branches/upstream/current/doc/rpsblast.txt.
* ncbi-tools6/branches/upstream/current/doc/blast/blastall.html:
Renamed from ncbi-tools6/branches/upstream/current/doc/README-qm.
Aaron M. Ucko [Thu, 24 Mar 2005 02:37:49 +0000 (02:37 +0000)]
To prepare to load ncbi (6.1.20040202) into
ncbi-tools6/branches/upstream/current, perform 27 renames.
* ncbi-tools6/branches/upstream/current/api/asn2gnb1.c: Renamed from
ncbi-tools6/branches/upstream/current/api/asn2gnbk.c.
* ncbi-tools6/branches/upstream/current/demo/blast_driver.c: Renamed
from ncbi-tools6/branches/upstream/current/algo/blast/api/blast.c.
* ncbi-tools6/branches/upstream/current/demo/debruijn.c: Renamed from
ncbi-tools6/branches/upstream/current/algo/blast/api/debruijn.c.
* ncbi-tools6/branches/upstream/current/algo/blast/core/lookup_util.c:
Renamed from
ncbi-tools6/branches/upstream/current/algo/blast/core/util.c.
* ncbi-tools6/branches/upstream/current/algo/blast/core/lookup_util.h:
Renamed from
ncbi-tools6/branches/upstream/current/algo/blast/core/util.h.
* ncbi-tools6/branches/upstream/current/doc/images/seqn01.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn01.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn02.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn02.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn03.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn03.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn04.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn04.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn05.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn05.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn06.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn06.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn07.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn07.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn08.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn08.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn09.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn09.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn10.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn10.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn11.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn11.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn12.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn12.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn13.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn13.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn14.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn14.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn15.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn15.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn16.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn16.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn17.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn17.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn18.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn18.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn19.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn19.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn20.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn20.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn21.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn21.gif.
* ncbi-tools6/branches/upstream/current/doc/images/seqn22.png: Renamed
from ncbi-tools6/branches/upstream/current/doc/images/seqn22.gif.
Aaron M. Ucko [Wed, 23 Mar 2005 23:48:57 +0000 (23:48 +0000)]
To prepare to load ncbi (6.1.20031028) into
ncbi-tools6/branches/upstream/current, perform 9 renames.
* ncbi-tools6/branches/upstream/current/doc/rpsblast.txt: Renamed from
ncbi-tools6/branches/upstream/current/doc/README.rps.
* ncbi-tools6/branches/upstream/current/doc/netblast.txt: Renamed from
ncbi-tools6/branches/upstream/current/doc/README.nbl.
* ncbi-tools6/branches/upstream/current/doc/megablast.txt: Renamed from
ncbi-tools6/branches/upstream/current/doc/README.mbl.
* ncbi-tools6/branches/upstream/current/doc/impala.txt: Renamed from
ncbi-tools6/branches/upstream/current/doc/README.imp.
* ncbi-tools6/branches/upstream/current/platform/ibm_auto64.ncbi.mk:
Renamed from
ncbi-tools6/branches/upstream/current/platform/ibm_pwr3.ncbi.mk.
* ncbi-tools6/branches/upstream/current/doc/formatdb.txt: Renamed from
ncbi-tools6/branches/upstream/current/doc/README.formatdb.
* ncbi-tools6/branches/upstream/current/doc/fastacmd.txt: Renamed from
ncbi-tools6/branches/upstream/current/doc/README.fastacmd.
* ncbi-tools6/branches/upstream/current/doc/blastclust.txt: Renamed
from ncbi-tools6/branches/upstream/current/doc/README.bcl.
* ncbi-tools6/branches/upstream/current/doc/blast.txt: Renamed from
ncbi-tools6/branches/upstream/current/doc/README.bls.
Aaron M. Ucko [Wed, 23 Mar 2005 21:07:51 +0000 (21:07 +0000)]
To prepare to load ncbi (6.1.20021119) into
ncbi-tools6/branches/upstream/current, perform 5 renames.
* ncbi-tools6/branches/upstream/current/connect/ncbi_dispd.c: Renamed from
ncbi-tools6/branches/upstream/current/connect/ncbi_service_dispd.c.
* ncbi-tools6/branches/upstream/current/connect/ncbi_lbsmd_stub.c: Renamed from
ncbi-tools6/branches/upstream/current/connect/ncbi_service_lbsmd_stub.c.
* ncbi-tools6/branches/upstream/current/connect/ncbi_dispd.h: Renamed from
ncbi-tools6/branches/upstream/current/connect/ncbi_servicep_dispd.h.
* ncbi-tools6/branches/upstream/current/connect/ncbi_lbsmd.h: Renamed from
ncbi-tools6/branches/upstream/current/connect/ncbi_servicep_lbsmd.h.
* ncbi-tools6/branches/upstream/current/doc/dispatcher.html: Renamed from
ncbi-tools6/branches/upstream/current/doc/firewall.txt.
Aaron M. Ucko [Wed, 23 Mar 2005 20:19:20 +0000 (20:19 +0000)]
To prepare to load ncbi (6.1.20020426) into
ncbi-tools6/branches/upstream/current, perform 2 renames.
* ncbi-tools6/branches/upstream/current/corelib/ncbilcl.hp_pa: Renamed
from ncbi-tools6/branches/upstream/current/corelib/ncbilcl.hp.
* ncbi-tools6/branches/upstream/current/network/nsclilib/ni_service.c:
Renamed from
ncbi-tools6/branches/upstream/current/network/nsclilib/ni_serv.c.
Aaron M. Ucko [Wed, 23 Mar 2005 19:38:00 +0000 (19:38 +0000)]
To prepare to load ncbi (6.1.20011220) into
ncbi-tools6/branches/upstream/current, perform 3 renames.
* ncbi-tools6/branches/upstream/current/ctools/asn_connection.c:
Renamed from
ncbi-tools6/branches/upstream/current/connect/asn_connection.c.
* ncbi-tools6/branches/upstream/current/ctools/asn_connection.h:
Renamed from
ncbi-tools6/branches/upstream/current/connect/asn_connection.h.
* ncbi-tools6/branches/upstream/current/make/msvc_prj/ncbi.dsw: Renamed
from ncbi-tools6/branches/upstream/current/ncbi.dsw.
Aaron M. Ucko [Wed, 23 Mar 2005 17:38:53 +0000 (17:38 +0000)]
To prepare to load ncbi (6.1.20010709) into
ncbi-tools6/branches/upstream/current, perform 2 renames.
* ncbi-tools6/branches/upstream/current/doc/README.sdk: Renamed from
ncbi-tools6/branches/upstream/current/doc/README.
* ncbi-tools6/branches/upstream/current/connect/mitsock: Renamed from
ncbi-tools6/branches/upstream/current/network/ncsasock.