amu.scripts.mit.edu Git - ncbi-tools6.git/commit

]> amu.scripts.mit.edu Git - ncbi-tools6.git/commit

author	Aaron M. Ucko <ucko@debian.org>
	Thu, 24 Mar 2005 18:46:06 +0000 (18:46 +0000)
committer	Aaron M. Ucko <ucko@debian.org>
	Thu, 24 Mar 2005 18:46:06 +0000 (18:46 +0000)
commit	63b21a5f6060202b6d5c888d203e78ba871abcc2
tree	03fb3548fb6902e89097d17630f910e220b420a8	tree \| snapshot
parent	d5cd243f986e2366bd1dfe5f923d2ce7e1002f93	commit \| diff

Load ncbi (6.1.20041020) into ncbi-tools6/branches/upstream/current.

346 files changed:

VERSION		diff \| blob \| history
access/ent2api.c		diff \| blob \| history
access/makeacc.unx		diff \| blob \| history
access/objtax3.c	[new file with mode: 0644]	blob
access/objtax3.h	[new file with mode: 0644]	blob
access/pmfapi.c		diff \| blob \| history
access/pmfapi.h		diff \| blob \| history
access/tax3api.c	[new file with mode: 0644]	blob
access/tax3api.h	[new file with mode: 0644]	blob
access/taxon3.asn	[new file with mode: 0644]	blob
algo/blast/api/blast_format.c		diff \| blob \| history
algo/blast/api/blast_format.h		diff \| blob \| history
algo/blast/api/blast_input.c		diff \| blob \| history
algo/blast/api/blast_input.h		diff \| blob \| history
algo/blast/api/blast_mtlock.c	[new file with mode: 0644]	blob
algo/blast/api/blast_mtlock.h	[new file with mode: 0644]	blob
algo/blast/api/blast_prelim.c	[new file with mode: 0644]	blob
algo/blast/api/blast_prelim.h	[new file with mode: 0644]	blob
algo/blast/api/blast_returns.c		diff \| blob \| history
algo/blast/api/blast_returns.h		diff \| blob \| history
algo/blast/api/blast_seq.c		diff \| blob \| history
algo/blast/api/blast_seq.h		diff \| blob \| history
algo/blast/api/blast_seqalign.c		diff \| blob \| history
algo/blast/api/blast_seqalign.h		diff \| blob \| history
algo/blast/api/blast_tabular.c		diff \| blob \| history
algo/blast/api/blast_tabular.h		diff \| blob \| history
algo/blast/api/blast_tback.c	[new file with mode: 0644]	blob
algo/blast/api/blast_tback.h	[new file with mode: 0644]	blob
algo/blast/api/hspstream_queue.c		diff \| blob \| history
algo/blast/api/hspstream_queue.h		diff \| blob \| history
algo/blast/api/seqsrc_multiseq.c		diff \| blob \| history
algo/blast/api/seqsrc_multiseq.h		diff \| blob \| history
algo/blast/api/seqsrc_readdb.c		diff \| blob \| history
algo/blast/api/twoseq_api.c		diff \| blob \| history
algo/blast/api/twoseq_api.h		diff \| blob \| history
algo/blast/core/aa_ungapped.c		diff \| blob \| history
algo/blast/core/blast_def.h		diff \| blob \| history
algo/blast/core/blast_diagnostics.c		diff \| blob \| history
algo/blast/core/blast_diagnostics.h		diff \| blob \| history
algo/blast/core/blast_dust.c		diff \| blob \| history
algo/blast/core/blast_dust.h		diff \| blob \| history
algo/blast/core/blast_encoding.h		diff \| blob \| history
algo/blast/core/blast_engine.c		diff \| blob \| history
algo/blast/core/blast_engine.h		diff \| blob \| history
algo/blast/core/blast_export.h	[new file with mode: 0644]	blob
algo/blast/core/blast_extend.c		diff \| blob \| history
algo/blast/core/blast_extend.h		diff \| blob \| history
algo/blast/core/blast_extend_pri.h	[new file with mode: 0644]	blob
algo/blast/core/blast_filter.c		diff \| blob \| history
algo/blast/core/blast_filter.h		diff \| blob \| history
algo/blast/core/blast_gapalign.c		diff \| blob \| history
algo/blast/core/blast_gapalign.h		diff \| blob \| history
algo/blast/core/blast_hits.c		diff \| blob \| history
algo/blast/core/blast_hits.h		diff \| blob \| history
algo/blast/core/blast_hspstream.h		diff \| blob \| history
algo/blast/core/blast_inline.h		diff \| blob \| history
algo/blast/core/blast_kappa.c		diff \| blob \| history
algo/blast/core/blast_kappa.h		diff \| blob \| history
algo/blast/core/blast_lookup.c		diff \| blob \| history
algo/blast/core/blast_lookup.h		diff \| blob \| history
algo/blast/core/blast_options.c		diff \| blob \| history
algo/blast/core/blast_options.h		diff \| blob \| history
algo/blast/core/blast_psi.c		diff \| blob \| history
algo/blast/core/blast_psi.h		diff \| blob \| history
algo/blast/core/blast_psi_priv.c		diff \| blob \| history
algo/blast/core/blast_psi_priv.h		diff \| blob \| history
algo/blast/core/blast_rps.h		diff \| blob \| history
algo/blast/core/blast_seg.c		diff \| blob \| history
algo/blast/core/blast_seg.h		diff \| blob \| history
algo/blast/core/blast_seqsrc.c		diff \| blob \| history
algo/blast/core/blast_seqsrc.h		diff \| blob \| history
algo/blast/core/blast_setup.c		diff \| blob \| history
algo/blast/core/blast_setup.h		diff \| blob \| history
algo/blast/core/blast_stat.c		diff \| blob \| history
algo/blast/core/blast_stat.h		diff \| blob \| history
algo/blast/core/blast_traceback.c		diff \| blob \| history
algo/blast/core/blast_traceback.h		diff \| blob \| history
algo/blast/core/blast_util.c		diff \| blob \| history
algo/blast/core/blast_util.h		diff \| blob \| history
algo/blast/core/gapinfo.h		diff \| blob \| history
algo/blast/core/greedy_align.c		diff \| blob \| history
algo/blast/core/greedy_align.h		diff \| blob \| history
algo/blast/core/hspstream_collector.c		diff \| blob \| history
algo/blast/core/hspstream_collector.h		diff \| blob \| history
algo/blast/core/link_hsps.c		diff \| blob \| history
algo/blast/core/link_hsps.h		diff \| blob \| history
algo/blast/core/lookup_wrap.c		diff \| blob \| history
algo/blast/core/lookup_wrap.h		diff \| blob \| history
algo/blast/core/mb_lookup.c		diff \| blob \| history
algo/blast/core/mb_lookup.h		diff \| blob \| history
algo/blast/core/ncbi_std.h		diff \| blob \| history
algo/blast/core/pattern.h		diff \| blob \| history
algo/blast/core/phi_extend.c		diff \| blob \| history
algo/blast/core/phi_extend.h		diff \| blob \| history
algo/blast/core/phi_lookup.c		diff \| blob \| history
algo/blast/core/phi_lookup.h		diff \| blob \| history
api/alignmgr2.c		diff \| blob \| history
api/alignval.c		diff \| blob \| history
api/asn2gnb1.c		diff \| blob \| history
api/asn2gnb2.c		diff \| blob \| history
api/asn2gnb3.c		diff \| blob \| history
api/asn2gnb4.c		diff \| blob \| history
api/asn2gnb5.c		diff \| blob \| history
api/asn2gnb6.c		diff \| blob \| history
api/asn2gnbi.h		diff \| blob \| history
api/asn2gnbp.h		diff \| blob \| history
api/edutil.c		diff \| blob \| history
api/edutil.h		diff \| blob \| history
api/explore.h		diff \| blob \| history
api/fdlKludge.h		diff \| blob \| history
api/gbftdef.h		diff \| blob \| history
api/gbftglob.c		diff \| blob \| history
api/gbparint.c		diff \| blob \| history
api/gbparlex.h		diff \| blob \| history
api/lsqfetch.c		diff \| blob \| history
api/lsqfetch.h		diff \| blob \| history
api/objmgr.c		diff \| blob \| history
api/salpacc.c		diff \| blob \| history
api/salpacc.h		diff \| blob \| history
api/salutil.c		diff \| blob \| history
api/seqmgr.c		diff \| blob \| history
api/seqmgr.h		diff \| blob \| history
api/seqport.c		diff \| blob \| history
api/seqport.h		diff \| blob \| history
api/sequtil.c		diff \| blob \| history
api/sequtil.h		diff \| blob \| history
api/sqnutil1.c		diff \| blob \| history
api/sqnutil2.c		diff \| blob \| history
api/sqnutil3.c		diff \| blob \| history
api/sqnutils.h		diff \| blob \| history
api/tofasta.c		diff \| blob \| history
api/tofasta.h		diff \| blob \| history
api/txalign.c		diff \| blob \| history
api/txalign.h		diff \| blob \| history
api/utilpub.c		diff \| blob \| history
api/valid.c		diff \| blob \| history
api/valid.h		diff \| blob \| history
api/valid.msg		diff \| blob \| history
api/validerr.h		diff \| blob \| history
asn/asn.all		diff \| blob \| history
asn/makestat.bat		diff \| blob \| history
asn/makestat.unx		diff \| blob \| history
asn/seq.asn		diff \| blob \| history
asnlib/asncode.c		diff \| blob \| history
asnlib/asnprint.c		diff \| blob \| history
asnlib/asntool.c		diff \| blob \| history
asnstat/all.h		diff \| blob \| history
asnstat/asnseq.h		diff \| blob \| history
asnstat/asntax3.h	[new file with mode: 0644]	blob
biostruc/cdd/cdd.asn		diff \| blob \| history
biostruc/cdd/cdd.h		diff \| blob \| history
biostruc/cdd/cddserver.c	[deleted file]	blob \| history
biostruc/cdd/cddsrv.h	[deleted file]	blob \| history
biostruc/cdd/cddumper.c	[deleted file]	blob \| history
biostruc/cdd/cddutil.c		diff \| blob \| history
biostruc/cdd/objcdd.c		diff \| blob \| history
biostruc/cdd/objcdd.h		diff \| blob \| history
biostruc/cdd/qrpsb.c	[deleted file]	blob \| history
biostruc/cdd/wrpsb.h	[deleted file]	blob \| history
biostruc/cdd/wrpsbcl3.c	[deleted file]	blob \| history
biostruc/cdd/wrpsbtool.c	[deleted file]	blob \| history
biostruc/cdd/wrpsbtool.h	[deleted file]	blob \| history
checkout.date		diff \| blob \| history
connect/lbapi/lbapi.c	[deleted file]	blob \| history
connect/lbapi/lbapi.h	[deleted file]	blob \| history
connect/ncbi_ansi_ext.c		diff \| blob \| history
connect/ncbi_comm.h		diff \| blob \| history
connect/ncbi_connutil.c		diff \| blob \| history
connect/ncbi_connutil.h		diff \| blob \| history
connect/ncbi_dispd.c		diff \| blob \| history
connect/ncbi_heapmgr.h		diff \| blob \| history
connect/ncbi_service.c		diff \| blob \| history
connect/ncbi_service.h		diff \| blob \| history
connect/ncbi_service_connector.c		diff \| blob \| history
connect/ncbi_servicep.h		diff \| blob \| history
connect/ncbi_socket.c		diff \| blob \| history
connect/ncbi_socket.h		diff \| blob \| history
connect/test/io_bounce.c	[deleted file]	blob \| history
connect/test/sock_srv.c	[deleted file]	blob \| history
connect/test/test_ncbi_disp.c		diff \| blob \| history
connect/test/url_cgi.c	[deleted file]	blob \| history
connect/urlquery.c		diff \| blob \| history
corelib/ncbienv.c		diff \| blob \| history
corelib/ncbifile.c		diff \| blob \| history
corelib/ncbilcl.fbd		diff \| blob \| history
corelib/ncbimem.c		diff \| blob \| history
corelib/ncbiopt.h		diff \| blob \| history
data/sequin.hlp		diff \| blob \| history
demo/.BLAST_VERSION		diff \| blob \| history
demo/asn2all.c	[new file with mode: 0644]	blob
demo/asn2fsa.c		diff \| blob \| history
demo/asn2gb.c		diff \| blob \| history
demo/asn2idx.c	[new file with mode: 0644]	blob
demo/bl2seq.c		diff \| blob \| history
demo/blast_driver.c		diff \| blob \| history
demo/blastall.c		diff \| blob \| history
demo/blastclust.c		diff \| blob \| history
demo/blastpgp.c		diff \| blob \| history
demo/copymat.c		diff \| blob \| history
demo/fastacmd.c		diff \| blob \| history
demo/formatdb.c		diff \| blob \| history
demo/formatrpsdb.c	[new file with mode: 0644]	blob
demo/makemat.c		diff \| blob \| history
demo/megablast.c		diff \| blob \| history
demo/profiles.c		diff \| blob \| history
demo/qbatch.c		diff \| blob \| history
demo/rpsblast.c		diff \| blob \| history
demo/rtestval.c		diff \| blob \| history
demo/sortbyquote.c	[new file with mode: 0644]	blob
demo/tbl2asn.c		diff \| blob \| history
demo/testent2.c		diff \| blob \| history
demo/vecscreen.c		diff \| blob \| history
desktop/asn2graphic.c		diff \| blob \| history
desktop/biosrc.c		diff \| blob \| history
desktop/biosrc.h		diff \| blob \| history
desktop/bspview.c		diff \| blob \| history
desktop/bspview.h		diff \| blob \| history
desktop/cdrgn.c		diff \| blob \| history
desktop/dlgutil1.c		diff \| blob \| history
desktop/dlogutil.h		diff \| blob \| history
desktop/gbfview.c		diff \| blob \| history
desktop/gphview.c		diff \| blob \| history
desktop/import.c		diff \| blob \| history
desktop/mapgene.c		diff \| blob \| history
desktop/pubdesc.c		diff \| blob \| history
desktop/saledit.h		diff \| blob \| history
desktop/salfiles.c		diff \| blob \| history
desktop/salpanel.c		diff \| blob \| history
desktop/salparam.c		diff \| blob \| history
desktop/salparam.h		diff \| blob \| history
desktop/salsa.c		diff \| blob \| history
desktop/seqpanel.c		diff \| blob \| history
desktop/seqpanel.h		diff \| blob \| history
desktop/vsm.c		diff \| blob \| history
desktop/vsmfile.c		diff \| blob \| history
desktop/vsmutil.c		diff \| blob \| history
desktop/vsmutil.h		diff \| blob \| history
doc/access.txt		diff \| blob \| history
doc/blast/blastclust.html		diff \| blob \| history
doc/blast/blastpgp.html		diff \| blob \| history
doc/blast/formatrpsdb.html	[new file with mode: 0644]	blob
doc/blast/index.html		diff \| blob \| history
doc/blast/megablast.html		diff \| blob \| history
doc/fwd_check.sh		diff \| blob \| history
errmsg/valid.msg		diff \| blob \| history
link/macmet/ApplicationStationery.mcp		diff \| blob \| history
link/macmet/setrsrc.sh		diff \| blob \| history
link/mswin/asn2all.rc	[new file with mode: 0644]	blob
link/mswin/asn2fsa.rc	[new file with mode: 0644]	blob
link/mswin/asn2idx.rc	[new file with mode: 0644]	blob
link/mswin/formatrpsdb.rc	[new file with mode: 0644]	blob
make/makeApps.met		diff \| blob \| history
make/makeLibs.met		diff \| blob \| history
make/makeall.unx		diff \| blob \| history
make/makeallchives		diff \| blob \| history
make/makedemo.unx		diff \| blob \| history
make/makedis.csh		diff \| blob \| history
make/makenet.unx		diff \| blob \| history
make/msvc_prj/algo/blast/api/blastapi.dsp		diff \| blob \| history
make/msvc_prj/all2one.sh	[new file with mode: 0755]	blob
make/msvc_prj/demo/asn2all/demo_asn2all.dsp	[new file with mode: 0644]	blob
make/msvc_prj/demo/asn2fsa/demo_asn2fsa.dsp	[new file with mode: 0644]	blob
make/msvc_prj/demo/asn2idx/demo_asn2idx.dsp	[new file with mode: 0644]	blob
make/msvc_prj/demo/formatrpsdb/demo_formatrpsdb.dsp	[new file with mode: 0644]	blob
make/msvc_prj/demo/tbl2asn/demo_tbl2asn.dsp		diff \| blob \| history
make/msvc_prj/install.sh		diff \| blob \| history
make/msvc_prj/ncbi.dsw		diff \| blob \| history
make/msvc_prj/object/ncbiobj.dsp		diff \| blob \| history
make/msvc_prj/one2all.sh	[new file with mode: 0755]	blob
make/msvc_prj/one2all_r.sh	[new file with mode: 0755]	blob
make/msvc_prj/one2one.sh	[new file with mode: 0755]	blob
make/msvc_prj/tools/ncbitool.dsp		diff \| blob \| history
make/packApps.met		diff \| blob \| history
make/readme.unx		diff \| blob \| history
make/xCode/NCBI.xcode/project.pbxproj	[new file with mode: 0644]	blob
network/blast3/client/netblap3.h		diff \| blob \| history
network/id1arch/idfetch.c		diff \| blob \| history
network/id2arch/id2.asn		diff \| blob \| history
network/id2arch/id2.c		diff \| blob \| history
network/id2arch/id2.h		diff \| blob \| history
network/id2arch/id2gen.h		diff \| blob \| history
network/id2arch/id2sgen.c		diff \| blob \| history
network/id2arch/id2sgen.h		diff \| blob \| history
network/id2arch/seqsplit.asn		diff \| blob \| history
network/id2arch/seqsplit.h		diff \| blob \| history
network/medarch/client/mdrcherr.h		diff \| blob \| history
network/medarch/client/medarch.msg		diff \| blob \| history
network/medarch/client/medutil.c		diff \| blob \| history
network/nsclilib/ni_service.c		diff \| blob \| history
network/nsclilib/ni_www.c		diff \| blob \| history
network/taxon1/common/taxutil.c		diff \| blob \| history
network/taxon1/taxon2/tc2proc.c		diff \| blob \| history
network/wwwblast/Src/wblast2.c		diff \| blob \| history
network/wwwblast/Src/wwwblast.h		diff \| blob \| history
object/objpubd.h		diff \| blob \| history
object/objseq.c		diff \| blob \| history
platform/linux.ncbi.mk		diff \| blob \| history
sequin/sequin.h		diff \| blob \| history
sequin/sequin1.c		diff \| blob \| history
sequin/sequin10.c		diff \| blob \| history
sequin/sequin2.c		diff \| blob \| history
sequin/sequin3.c		diff \| blob \| history
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sequin/sequin6.c		diff \| blob \| history
sequin/sequin7.c		diff \| blob \| history
sequin/sequin8.c		diff \| blob \| history
sequin/sequin9.c		diff \| blob \| history
tools/actutils.c		diff \| blob \| history
tools/actutils.h		diff \| blob \| history
tools/blast.c		diff \| blob \| history
tools/blast.h		diff \| blob \| history
tools/blastdef.h		diff \| blob \| history
tools/blastkar.c		diff \| blob \| history
tools/blastkar.h		diff \| blob \| history
tools/blastool.c		diff \| blob \| history
tools/blastpri.h		diff \| blob \| history
tools/blastutl.c		diff \| blob \| history
tools/blfmtutl.c	[new file with mode: 0644]	blob
tools/blfmtutl.h	[new file with mode: 0644]	blob
tools/impatool.c		diff \| blob \| history
tools/kappa.c		diff \| blob \| history
tools/mblast.c		diff \| blob \| history
tools/objscoremat.c		diff \| blob \| history
tools/objscoremat.h		diff \| blob \| history
tools/posit.c		diff \| blob \| history
tools/posit.h		diff \| blob \| history
tools/posit2.c		diff \| blob \| history
tools/profiles.h		diff \| blob \| history
tools/readdb.c		diff \| blob \| history
tools/readdb.h		diff \| blob \| history
tools/rpsutil.c		diff \| blob \| history
tools/salptool.c		diff \| blob \| history
tools/salptool.h		diff \| blob \| history
tools/scoremat.asn		diff \| blob \| history
tools/scoremat.h		diff \| blob \| history
tools/taxblast.c		diff \| blob \| history
tools/toasn3.c		diff \| blob \| history
tools/toporg.c		diff \| blob \| history
tools/vecscrn.c		diff \| blob \| history
tools/xmlblast.c		diff \| blob \| history
util/creaders/alnread.c		diff \| blob \| history
vibrant/document.c		diff \| blob \| history
vibrant/vibprmpt.c		diff \| blob \| history
vibrant/vibtexts.c		diff \| blob \| history
vibrant/vibwndws.c		diff \| blob \| history

Debian packaging of NCBI's C Toolkit.

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